NetLogo User Community Models
by Cristian Jimenez Romero (Submitted: 09/18/2015)
## WHAT IS IT?
The presented Spiking Neural Network (SNN) model is built in the framework of generalized Integrate-and-fire models which recreate to some extend the phenomenological dynamics of neurons while abstracting the biophysical processes behind them. The Spike Timing Dependent Plasticity (STDP) learning approach proposed by (Gerstner and al. 1996, Kempter et al. 1999) has been implemented and used as the underlying learning mechanism for the experimental neural circuit.
The neural circuit implemented in this model enables a simulated agent representing a virtual insect to move in a two dimensional world, learning to visually identify and avoid noxious stimuli while moving towards perceived rewarding stimuli. At the beginning, the agent is not aware of which stimuli are to be avoided or followed. Learning occurs through Reward-and-punishment classical conditioning. Here the agent learns to associate different colours with unconditioned reflex responses.
## HOW IT WORKS
The experimental virtual-insect is able to process three types of sensorial information: (1) visual, (2) pain and (3) pleasant or rewarding sensation. The visual information is acquired through three photoreceptors where each one of them is sensitive to one specific color (white, red or green). Each photoreceptor is connected with one afferent neuron which propagates the input pulses towards two Motoneurons identified by the labels 21 and 22. Pain is elicited by a nociceptor (labeled 4) whenever the insect collides with a wall or a noxious stimulus. A rewarding or pleasant sensation is elicited by a pheromone (or nutrient smell) sensor (labeled 5) when the insect gets in direct contact with the originating stimulus.
The motor system allows the virtual insect to move forward (neuron labeled 31) or rotate in one direction (neuron labeled 32) according to the reflexive behaviour associated to it. In order to keep the insect moving even in the absence of external stimuli, the motoneuron 22 is connected to a neural oscillator sub-circuit composed of two neurons (identified by the labels 23 and 24) performing the function of a pacemaker which sends a periodic pulse to Motoneuron 22. The pacemaker is initiated by a pulse from an input neuron (labeled 6) which represents an external input current (i.e; intracellular electrode).
## HOW TO USE IT
1. Press Setup to create:
2. Press go-forever to continually run the simulation.
3. Press re-draw world to change the virtual world by adding random patches.
4. Press relocate insect to bring the insect to its initial (center) position.
5. Use the awake creature switch to enable or disable the movement of the insect.
6. Use the colours switches to indicate which colours are associated to harmful stimuli.
7. Use the insect_view_distance slider to indicate the number of patches the insect can
8. Use the leave_trail_on? switch to follow the movement of the insect.
On the circuit side:
If istrainingmode? is on then the training phase is active. During the training phase, the insect is moved one patch forward everytime it is on a patch associated with a noxious stimulus. Otherwise, the insect would keep rotating over the noxious patch. Also, the insect is repositioned in its initial coordinates every time it reaches the virtual-world boundaries.
## THINGS TO NOTICE
At the beginning the insect moves along the virtual-world in a seemingly random way colliding equally with all types of coloured patches. This demonstrates the initial inability of the insect to discriminate and react in response to visual stimuli. However, after a few thousands iterations (depending on the learning parameters), it can be seen that the trajectories lengthen as the learning of the insect progresses and more obstacles (walls and harmful stimuli) are avoided.
## THINGS TO TRY
Follow the dynamic of single neurons by monitoring the membrane potential plots while running the simulation step by step.
Set different view distances to see if the behaviour of the insect changes.
Manipulate the STDP learning parameters. Which parameters speed up or slow down the adaptation to the environment?
## EXTENDING THE MODEL
Use different kernels for the decay() and epsp() functions to make the model more accurate in biological terms.
## NETLOGO FEATURES
Use of link and list primitives.
## CREDITS AND REFERENCES
If you mention this model in a publication, we ask that you include these citations for the model itself and for the NetLogo software:
* Cristian Jimenez-Romero, David Sousa-Rodrigues, Jeffrey H. Johnson, Vitorino Ramos
* Wilensky, U. (1999). NetLogo. http://ccl.northwestern.edu/netlogo/. Center for Connected Learning and Computer-Based Modeling, Northwestern University, Evanston, IL.
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